©2019 by Prof. James McDonald. Proudly created with Wix.com

PUBLICATIONS

 

2019

2018

2017

  • A communal catalogue reveals Earth's multiscale microbial diversity

    Thompson, LR, Sanders, JG, McDonald, D, Amir, A, Ladau, J, Locey, KJ, Prill, RJ, Tripathi, A, Gibbons, SM, Ackermann, G, Navas-Molina, JA, Janssen, S, Kopylova, E, Vazquez-Baeza, Y, Gonzalez, A, Morton, JT, Mirarab, S, Xu, ZZ, Jiang, L, Haroon, MF, Kanbar, J, Zhu, Q, Song, SJ, Kosciolek, T, Bokulich, NA, Lefler, J, Brislawn, CJ, Humphrey, G, Owens, SM, Hampton-Marcell, J, Berg-Lyons, D, McKenzie, V, Fierer, N, Fuhrman, JA, Clauset, A, Stevens, RL, Shade, A, Pollard, KS, Goodwin, KD, Jansson, JK, Gilbert, JA, Knight, R, Agosto Rivera, JL, Al-Moosawi, L, Alverdy, J, Amato, KR, Andras, J, Angenent, LT, Antonopoulos, DA, Apprill, A, Armitage, D, Ballantine, K, Bárta, J, Baum, JK, Berry, A, Bhatnagar, A, Bhatnagar, M, Biddle, JF, Bittner, L, Boldgiv, B, Bottos, E, Boyer, DM, Braun, J, Brazelton, W, Brearley, FQ, Campbell, AH, Caporaso, JG, Cardona, C, Carroll, J, Cary, SC, Casper, BB, Charles, TC, Chu, H, Claar, DC, Clark, RG, Clayton, JB, Clemente, JC, Cochran, A, Coleman, ML, Collins, G, Colwel, RR, Contreras, M, Crary, BB, Creer, S, Cristol, DA, Crump, BC, Cui, D, Daly, SE, Davalos, L, Dawson, RD, Defazio, J, Delsuc, F, Dionisi, HM, Dominguez-Bello, MG, Dowell, R, Dubinsky, EA, Dunn, PO, Ercolini, D, Espinoza, RE, Ezenwa, V, Fenner, N, Findlay, HS, Fleming, ID, Fogliano, V, Forsman, A, Freeman, C, Friedman, ES, Galindo, G, Garcia, L, Garcia-Amado, MA, Garshelis, D, Gasser, RB, Gerdts, G, Gibson, MK, Gifford, I, Gill, RT, Giray, T, Gittel, A, Golyshin, P, Gong, D, Grossart, H-P, Guyton, K, Haig, S-J, Hale, V, Hall, RS, Hallam, SJ, Handley, KM, Hasan, NA, Haydon, SR, Hickman, JE, Hidalgo, G, Hofmockel, KS, Hooker, J, Hulth, S, Hultman, J, Hyde, E, Ibáñez-Álamo, JD, Jastrow, JD, Jex, AR, Johnson, LS, Johnston, ER, Joseph, S, Jurburg, SD, Jurelevicius, D, Karlsson, A, Karlsson, R, Kauppinen, S, Kellogg, CTE, Kennedy, SJ, Kerkhof, LJ, King, GM, Kling, GW, Koehler, AV, Krezalek, M, Kueneman, J, Lamendella, R, Landon, EM, Lane-deGraaf, K, LaRoche, J, Larsen, P, Laverock, B, Lax, S, Lentino, M, Levin, II, Liancourt, P, Liang, W, Linz, AM, Lipson, DA, Liu, Y, Lladser, ME, Lozada, M, Spirito, CM, MacCormack, WP, MacRae-Crerar, A, Magris, M, Martín-Platero, AM, Martín-Vivaldi, M, Martínez, LM, Martínez-Bueno, M, Marzinelli, EM, Mason, OU, Mayer, GD, McDevitt-Irwin, JM, McDonald, J, McGuire, KL, McMahon, KD, McMinds, R, Medina, M, Mendelson, JR, Metcalf, JL, Meyer, F, Michelangeli, F, Miller, K, Mills, DA, Minich, J, Mocali, S, Moitinho-Silva, L, Moore, A, Morgan-Kiss, RM, Munroe, P, Myrold, D, Neufeld, JD, Ni, Y, Nicol, GW, Nielsen, S, Nissimov, JI, Niu, K, Nolan, MJ, Noyce, K, O’Brien, SL, Okamoto, N, Orlando, L, Ortiz Castellano, Y, Osuolale, O, Oswald, W, Parnell, J, Peralta-Sánchez, JM, Petraitis, P, Pfister, C, Pilon-Smits, E, Piombino, P, Pointing, SB, Pollock, FJ, Potter, C, Prithiviraj, B, Quince, C, Rani, A, Ranjan, R, Rao, S, Rees, AP, Richardson, M, Riebesell, U, Robinson, C, Rockne, KJ, Rodriguezl, SM, Rohwer, F, Roundstone, W, Safran, RJ, Sangwan, N, Sanz, V, Schrenk, M, Schrenzel, MD, Scott, NM, Seger, RL, Seguin-Orlando, A, Seldin, L, Seyler, LM, Shakhsheer, B, Sheets, GM, Shen, C, Shi, Y, Shin, H, Shogan, BD, Shutler, D, Siegel, J, Simmons, S, Sjöling, S, Smith, DP, Soler, JJ, Sperling, M, Steinberg, PD, Stephens, B, Stevens, MA, Taghavi, S, Tai, V, Tait, K, Tan, CL, Tas, N, Taylor, DL, Thomas, T, Timling, I, Turner, BL, Urich, T, Ursell, LK, van der Lelie, D, Van Treuren, W, van Zwieten, L, Vargas-Robles, D, Vega Thurber, R, Vitaglione, P, Walker, DA, Walters, WA, Wang, S, Wang, T, Weave, T, Webster, NS, Wehrle, B, Weisenhorn, P, Weiss, S, Werner, JJ, West, K, Whitehead, A, Whitehead, SR, Whittingham, LA, Willerslev, E, Williams, AE, Wood, SA, Woodhams, DC, Yang, Y, Zaneveld, J, Zarraonaindia, I, Zhang, Q & Zhao, H 2017, 'A communal catalogue reveals Earth's multiscale microbial diversity', Nature, vol. 551, no. 7681, pp. 457-+. https://doi.org/10.1038/nature24621

  • Physicochemical Factors Influence the Abundance and Culturability of Human Enteric Pathogens and Fecal Indicator Organisms in Estuarine Water and Sediment

    Hassard, F, Andrews, A, Jones, DL, Parsons, L, Jones, V, Cox, BA, Daldorph, P, Brett, H, McDonald, J & Malham, S 2017, 'Physicochemical Factors Influence the Abundance and Culturability of Human Enteric Pathogens and Fecal Indicator Organisms in Estuarine Water and Sediment', Frontiers in Microbiology, vol. 8, 1996. https://doi.org/10.3389/fmicb.2017.01996

  • Evaluation of Two Triplex One-Step qRT-PCR Assays for the Quantification of Human Enteric Viruses in Environmental Samples

    Farkas, K, Peters, DE, McDonald, J, de Rougemont, A, Malham, S & Jones, D 2017, 'Evaluation of Two Triplex One-Step qRT-PCR Assays for the Quantification of Human Enteric Viruses in Environmental Samples', Food and Environmental Virology, vol. 9, no. 3, pp. 342-349. https://doi.org/10.1007/s12560-017-9293-5

  • Subtle shifts in microbial communities occur alongside the release of carbon induced by drought and rewetting in contrasting peatland ecosystems

    Potter, C, Freeman, C, Golyshin, P, Ackerman, G, Fenner, N, McDonald, J, Ehbair, A, Jones, T, Murphy, L & Creer, S 2017, 'Subtle shifts in microbial communities occur alongside the release of carbon induced by drought and rewetting in contrasting peatland ecosystems', Scientific Reports, vol. 7, 11314. https://doi.org/10.1038/s41598-017-11546-w

  • Lignocellulose-Degrading Microbial Communities in Landfill Sites Represent a Repository of Unexplored Biomass- Degrading Diversity Emma

    Ransom-Jones, E, McCarthy, AJ, Haldenby, S, Doonan, J & McDonald, JE 2017, 'Lignocellulose-Degrading Microbial Communities in Landfill Sites Represent a Repository of Unexplored Biomass- Degrading Diversity Emma', mSphere, vol. 2, no. 4, e00300. https://doi.org/10.1128/mSphere.00300-17

  • Taxonomy and identification of bacteria associated with acute oak decline

    Brady, C, Arnold, D, McDonald, J & Denman, S 2017, 'Taxonomy and identification of bacteria associated with acute oak decline', World Journal of Microbiology and Biotechnology, vol. 33, no. 7, pp. 143. https://doi.org/10.1007/s11274-017-2296-4

  • Multilocus sequence typing provides insights into the population structure and evolutionary potential of Brenneria goodwinii, associated with acute oak decline

    Kaczmarek, M, Mullett, MS, McDonald, J & Denman, S 2017, 'Multilocus sequence typing provides insights into the population structure and evolutionary potential of Brenneria goodwinii, associated with acute oak decline', PLoS ONE, vol. 12, no. 6, e0178390. https://doi.org/10.1371/journal.pone.0178390

  • Critical Review on the Public Health Impact of Norovirus Contamination in Shellfish and the Environment

    Hassard, F, Sharp, J, Taft, H, Le Vay, L, Harris, J, McDonald, J, Tuson, K, Wilson, J, Jones, D & Malham, S 2017, 'Critical Review on the Public Health Impact of Norovirus Contamination in Shellfish and the Environment: A UK Perspective', Food and Environmental Virology, vol. 9, no. 2, pp. 123-141. https://doi.org/10.1007/s12560-017-9279-3

  • Fifty important research questions in microbial ecology

    Antwis, RE, Griffiths, SM, Harrison, XA, Aranega-Bou, P, Arce, A, Bettridge, AS, Brailsford, F, de Menezes, A, Devaynes, A, Forbes, KM, Fry, EL, Goodhead, I, Haskell, E, Heys, C, James, C, Johnston, SR, Lewis, GR, Lewis, Z, Macey, MC, McCarthy, A, McDonald, J, Mejia-Florez, NL, O'Brien, D, Orland, C, Pautasso, M, Reid, WDK, Robinson, HA, Wilson, K & Sutherland, WJ 2017, 'Fifty important research questions in microbial ecology', Fems Microbiology Ecology, vol. 93, no. 5, fix044. https://doi.org/10.1093/femsec/fix044

  • Evaluation of Molecular Methods for the Detection and Quantification of Pathogen-Derived Nucleic Acids in Sediment

    Farkas, K, Hassard, F, McDonald, J, Malham, S & Jones, D 2017, 'Evaluation of Molecular Methods for the Detection and Quantification of Pathogen-Derived Nucleic Acids in Sediment', Frontiers in Microbiology, vol. 6, 53, pp. 1-12. https://doi.org/10.3389/fmicb.2017.00053

  • Identification of Armillaria species on declined oak in Britain

    Denman, S, Barrett, G, Kirk, SA, McDonald, J & Coetzee, MPA 2017, 'Identification of Armillaria species on declined oak in Britain: implications for oak health', Forestry, vol. 90, no. 1, pp. 148-161. https://doi.org/10.1093/forestry/cpw054

2016

2015

2014

2013

2012

2010

2009

2008